Browsing by Author "Ozdemir, G"

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    Production of laccase from Trametes trogii TEM H2: a newly isolated white-rot fungus by air sampling
    Kocyigit, A; Pazarbasi, MB; Yasa, I; Ozdemir, G; Karaboz, I
    This work represents the first report of isolation of potential laccase producers by air sampling using media supplemented with 2,2-azinobis (3-ethylbenzothiazoline-6-sulfonate) and guaiacol for laccase production and secretion indicators. Nine fungal isolates showed positive reactions with 2,2-azinobis (3-ethylbenzothiazoline-6-sulfonate) and guaiacol. The isolate named TEM H2 exhibited the largest and intensive oxidation zones with 2,2-azinobis (3-ethylbenzothiazoline-6-sulfonate) (85 mm) and guaiacol (66 mm) and therefore it was selected for detailed investigations. The strain was identified as Trametes trogii TEM H2 due to the morphological characteristics and the comparison of internal transcribed spacer ribosomal DNA gene sequences. The laccase production was screened in different liquid cultures. The best laccase production medium was determined as soluble starch yeast extract medium in which laccase production was reached to a maximum level (989.6 U l1) on the 8th day of cultivation. Effects of different initial pH values on laccase production were tested. Optimum pH value for laccase production in soluble starch yeast extract medium was determined as pH 3.0 with 15425.0 U l1laccase production at 12th day of cultivation. In addition, effects of eight inducers (veratryl alcohol, ferulic acid, 1-Hydroxybenzotriazole, syringic acid, 2,2-azinobis (3-ethylbenzothiazoline-6-sulfonate), 1 mmol l1 CuSO4, 3% ethanol, guaiacol) were examined. Only cultures with 2,5-xylidine exhibited 1.9 fold increase in laccase activity reaching to 28890.0 U l1. ((c) 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)
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    DECOLORIZATION OF VARIOUS LEATHER DYES AND LEATHER INDUSTRY EFFLUENT BY Trametes trogii TEM H2
    Pazarbasi, MB; Kocyigit, A; Ozdemir, G; Yasa, I; Karaboz, I
    Decolorization of Acid Blue 7 which is used widely in leather industry was investigated as a model for a decolorization system using soluble starch yeast extract medium under agitated and static conditions with Trametes trogii TEM H2. The effects of different physico-chemical parameters were tested and optimal decolorization rates occurred at pH 5.0 and at 27 degrees C. Decolorization of Acid Blue 7 under agitated and static conditions was determined to be 99.9% and 63.5%, respectively. Decolorization was associated with laccase activity which reached 1110.3 U/L in agitated cultures in the presence of Acid Blue 7 on the 6th day of cultivation. T. trogii TEM H2 was further evaluated for the decolorization of 8 other leather dyes, such as Acid Black 210, Acid Green 20, Acid Yellow 36, Acid Black 24, Acid Black 234, Acid Violet 17, Acid Blue 134, Acid Brown 349, and a mixture of Acid Blue 7 with these 8 leather dyes and leather industry effluents. The decolorization rates after 24 h for the dye mixture and the effluent (10%) were 88% and 48%, respectively. The strain was considered as a good candidate for biodegradation and bioremediation of leather dye-polluted effluents due to its laccase production and decolorizing ability.
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    Antibacterial activity of volatile component and various extracts of Spirulina platensis
    Ozdemir, G; Karabay, NU; Dalay, MC; Pazarbasi, B
    The methanol, dichloromethane, petroleum ether, ethyl acetate extracts and volatile components of Spirulina platensis were tested in vitro for their antimicrobial activity (four Gram-positive, six Gram-negative bacteria and Candida albicans ATCC 10239). GC-MS analysis of the volatile components of S. platensis resulted in the identification of 15 compounds which constituted 96.45% of the total compounds. The volatile components of S. platensis consisted of heptadecane (39.70%) and tetradecane (34.61%) as major components. The methanol extract showed more potent antimicrobial activity than dichloromethane, petroleum ether, ethyl acetate extracts and volatile components. Copyright (C) 2004 John Wiley Sons, Ltd.
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    Full-mouth disinfection effects on gingival fluid calprotectin, osteocalcin, and N-telopeptide of Type I collagen in severe periodontitis
    Afacan, B; Cinarcik, S; Gurkan, A; Ozdemir, G; Ilhan, HA; Vural, C; Kose, T; Emingil, G
    Background To compare the effects of full-mouth disinfection (FMD) and full-mouth ultrasonic debridement (FMUD) on clinical, microbiological and biochemical parameters with conventional quadrant-wise scaling and root planning (Q-SRP) in severe chronic periodontitis. Methods In the present prospective randomized controlled clinical trial with three parallel arms (#NCT04038801), 60 chronic periodontitis patients were randomly assigned to three study groups by a consecutive number in ascending order: FMD (n = 20), FMUD (n = 20), and Q-SRP (n = 20). All measurements and treatments were performed by the same investigator. At baseline, gingival crevicular fluid (GCF) and subgingival plaque were collected and clinical periodontal parameters were recorded. Ultrasonic debridement was completed within 24 hours in FMD and FMUD groups. Chlorhexidine gluconate was used for FMD. Q-SRP was performed by hand instruments per quadrant at 1-week-intervals. Clinical measurements and sampling were repeated at 1, 3, and 6 months after treatment. Real-time PCR was used for quantitative analysis of Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, Tannerella forsythia, Fusobacterium nucleatum, and total bacteria count. GCF Calprotectin, osteocalcin, and N-telopeptide of type I collagen (NTx) levels were analyzed by ELISA. The changes of GCF biomarker levels after treatment between groups were the primary outcomes. Results No harm was observed. All treatment strategies resulted in significant improvements in all clinical parameters (P < 0.05), with no significant differences between study groups at all time-points (P > 0.05). Aggregatibacter actinomycetemcomitans was significantly decreased in FMD compared to FMUD and Q-SRP at 6 months (P < 0.05). Although GCF NTx total amounts increased in all groups during the study period, this increase was less prominent in full-mouth groups at three time points after treatment (P < 0.05). Conclusions Present results represent the short-term effects. Full-mouth treatment approaches offered limited beneficial effects on microbiological and biochemical parameters over quadrant-wise approach. All three treatment strategies can be recommended in the management of severe chronic periodontitis.